HsaALTA0007403-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000007376 | RPUSD1
Description
RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
Coordinates
chr16:787604-788383:-
Coord C1 exon
chr16:788256-788383
Coord A exon
chr16:787646-787744
Coord C2 exon
chr16:787604-787645
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ACCCACGCGTGGCTCGGCAGGCC
3' ss Score
5.15
Exon sequences
Seq C1 exon
GGGCGGAAGCGCTGCCAGGCGTCCGGAGCGGAGCTTCCAGGGTCTCTGGGTCGCCAGCGCGCGGGCGCGCGGCTGGAGCCGGCGCCGGGCACGGCATCGGGGGCCTGGACTGCACGGCCCGGCAGCAG
Seq A exon
GCCGGCCATGGAGCCAGGCAGCGTGGAGAACCTGTCCATCGTGTACCGGAGCCGCGACTTCCTGGTGGTCAACAAGCACTGGGACGTTCGCATTGACAG
Seq C2 exon
CAAGGCGTGGCGGGAGACTCTGACCCTGCAGAAGCAGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007376-0-4,0-3,0-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0160011=Corona_S1=PU(45.1=98.4),PF0084917=PseudoU_synth_2=PU(28.9=72.1)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCTTCCAGGGTCTCTG
R:
GCTTCTGCAGGGTCAGAGTCT
Band lengths:
135-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains