HsaALTA0007500-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000100241 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr22:50467571-50467923:-
Coord C1 exon
chr22:50467786-50467923
Coord A exon
chr22:50467592-50467693
Coord C2 exon
chr22:50467571-50467591
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CGTCTCCCCCTGACCCCCAGCAG
3' ss Score
5.51
Exon sequences
Seq C1 exon
TTTTGCCAGCCCAGCGGGTGGCAGCTGTGTCCCGAGAGGAATCCACCGACCTTCTTTGTTGCTGTCCTCACCGACATCAACTCCGAGCGCCACTACTGCGCCTGCTTGACCTTCTGGGAGCCAGCGGAGCCTTCACAG
Seq A exon
CAGGAAACGACGCGCGTGGAGGATGCCACAGAGAGGGAGGAAGAGGGGGATGAGGGAGGCCAGACCCACCTGTCTCCCACAGCACCTGCCCCATCTGCCCAG
Seq C2 exon
CTGTTTGCACCGAAGACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100241-11-8,11-7,11-6,11-5-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.549
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(60.3=82.6)
A:
NA
C2:
PF0214116=DENN=PU(9.8=34.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTGTGTCCCGAGAG
R:
AGCGTCTTCGGTGCAAACAG
Band lengths:
139-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains