HsaALTA0007500-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000100241 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr22:50467571-50467923:-
Coord C1 exon
chr22:50467786-50467923
Coord A exon
chr22:50467592-50467690
Coord C2 exon
chr22:50467571-50467591
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CTCCCCCTGACCCCCAGCAGGAA
3' ss Score
5.94
Exon sequences
Seq C1 exon
TTTTGCCAGCCCAGCGGGTGGCAGCTGTGTCCCGAGAGGAATCCACCGACCTTCTTTGTTGCTGTCCTCACCGACATCAACTCCGAGCGCCACTACTGCGCCTGCTTGACCTTCTGGGAGCCAGCGGAGCCTTCACAG
Seq A exon
GAAACGACGCGCGTGGAGGATGCCACAGAGAGGGAGGAAGAGGGGGATGAGGGAGGCCAGACCCACCTGTCTCCCACAGCACCTGCCCCATCTGCCCAG
Seq C2 exon
CTGTTTGCACCGAAGACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100241-11-8,11-7,11-6,11-5-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.549
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(60.3=82.6)
A:
NA
C2:
PF0214116=DENN=PU(9.8=34.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTGTGTCCCGAGAG
R:
AGCGTCTTCGGTGCAAACAG
Band lengths:
139-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains