HsaALTA0007877-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr19:6436364-6438534:-
Coord C1 exon
chr19:6438447-6438534
Coord A exon
chr19:6436465-6436468
Coord C2 exon
chr19:6436364-6436464
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
TCATAACATTTGCTCTGGAGGAA
3' ss Score
-3.62
Exon sequences
Seq C1 exon
GATTTCATCATGTTGCCCAGGCTCATCTCGAACTCGTGGGGTCAAGGAATTCGCCAGCCTTCAGCCTCCCAACGTGCTGGGATTACAG
Seq A exon
GAAG
Seq C2 exon
CCGGTGGTCATGCCATGAGCAGCCTTATGGAGAGGACCATGTGGTAAGGAACTCAGCCAATAGCCATGTAACTGAGCTTGGAAGAGGATCTTGCTGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648-33-47,33-46-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(35.7=66.7)
A:
NA
C2:
PF0015322=Mito_carr=PD(24.5=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCGAACTCGTGGGGTCAA
R:
CTCCATAAGGCTGCTCATGGC
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development