HsaEX0059043 @ hg38
Exon Skipping
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr19:6436079-6438534:-
Coord C1 exon
chr19:6438447-6438534
Coord A exon
chr19:6438191-6438312
Coord C2 exon
chr19:6436079-6436464
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATTTCCATCCTTTTTTTCAGATG
3' ss Score
10.7
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
GATTTCATCATGTTGCCCAGGCTCATCTCGAACTCGTGGGGTCAAGGAATTCGCCAGCCTTCAGCCTCCCAACGTGCTGGGATTACAG
Seq A exon
ATGCAGTTTCGCTCTGTTTCCCAGGCTGGAGTGCAATGACGTGATCTCAGCTCACTGCAACCTCCGCTTCCCGGGTTCAAGTGATCCTCCTGCCTCAGCCTCCAGAATAGCTGGGATTACAG
Seq C2 exon
CCGGTGGTCATGCCATGAGCAGCCTTATGGAGAGGACCATGTGGTAAGGAACTCAGCCAATAGCCATGTAACTGAGCTTGGAAGAGGATCTTGCTGTCCTGGCCAACATCTCACTGCAATTCTATCAGTTGAATTCCCTGGATAGTCCAAGCTTTGTGGATCCCTCCACCGAAACAACTGGATCCCAGTACCTGAATCCTGAATCTTAGACTCTTATACTTCAAACACTGATCACGGGAACAGCCGGCTCAGCGGCTCCTGAGTTCCTAATGCTCAGAATATGGGTGAGATGATAAATGTTTGTTGTGTTAAGCTGCCAACCTTTGGCGGGGGGGTAATTCGTCACATGGCAACAGCTGGCTAATACATATATACCTACATGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648_MULTIEX1-14/14=13-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.016
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(35.7=66.7)
A:
PF0015322=Mito_carr=PD(19.6=60.0)
C2:
PF0015322=Mito_carr=PD(24.5=75.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATGTTGCCCAGGCTCAT
R:
GGAGGGATCCACAAAGCTTGG
Band lengths:
250-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development