HsaALTA0007944-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35, member C2 [Source:HGNC Symbol;Acc:17117]
Coordinates
chr20:44987281-44993026:-
Coord C1 exon
chr20:44993010-44993026
Coord A exon
NA
Coord C2 exon
chr20:44987281-44987402
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CGGCCCTTTTTCCCCAGCAGCAG
3' ss Score
5.86
Exon sequences
Seq C1 exon
GAGCTCCCAGGGCCGAG
Seq A exon
NA
Seq C2 exon
CAGACCTTGGGACCTGTGAGCGCTGCATCCAATTAACCATGGGAAGGGTCAGCACCAGCCACCAGCCCCTTAGGTGAGGACTCTGCCTGGGGCTCTGCTGATGGTTCCGAATCATGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189-0-4,0-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0089215=EamA=PU(19.9=72.5)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)