HsaALTA0007944-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35, member C2 [Source:HGNC Symbol;Acc:17117]
Coordinates
chr20:44987281-44993026:-
Coord C1 exon
chr20:44993010-44993026
Coord A exon
chr20:44987403-44987597
Coord C2 exon
chr20:44987281-44987402
Length
195 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATCAGTTTGTGTTTTAAAAGGTC
3' ss Score
6.36
Exon sequences
Seq C1 exon
GAGCTCCCAGGGCCGAG
Seq A exon
GTCACTTTGGTGGCAGTTCATGGAGAATAGCTTGAGGTGACAAGACAGCAGACACGACGTGGGTCTCTGGGACTGCCTGTGCCGTTGTGGGCAGCCCCTCCAGAGCCCTGAGTCACGCAGCCTTCAGAGGCACCCATGGCTACGAGAAGCACAGTCTCTGCCTGAGGCTCCAGAGCGGCCCTTTTTCCCCAGCAG
Seq C2 exon
CAGACCTTGGGACCTGTGAGCGCTGCATCCAATTAACCATGGGAAGGGTCAGCACCAGCCACCAGCCCCTTAGGTGAGGACTCTGCCTGGGGCTCTGCTGATGGTTCCGAATCATGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189-0-4,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0089215=EamA=PU(19.9=72.5)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)