HsaALTA0007944-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35 member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr20:46358691-46364404:-
Coord C1 exon
chr20:46364371-46364404
Coord A exon
chr20:46358764-46358958
Coord C2 exon
chr20:46358691-46358763
Length
195 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATCAGTTTGTGTTTTAAAAGGTC
3' ss Score
6.36
Exon sequences
Seq C1 exon
GGGGAGATTCCGGCCTGGAGCTCCCAGGGCCGAG
Seq A exon
GTCACTTTGGTGGCAGTTCATGGAGAATAGCTTGAGGTGACAAGACAGCAGACACGACGTGGGTCTCTGGGACTGCCTGTGCCGTTGTGGGCAGCCCCTCCAGAGCCCTGAGTCACGCAGCCTTCAGAGGCACCCATGGCTACGAGAAGCACAGTCTCTGCCTGAGGCTCCAGAGCGGCCCTTTTTCCCCAGCAG
Seq C2 exon
CAGACCTTGGGACCTGTGAGCGCTGCATCCAATTAACCATGGGAAGGGTCAGCACCAGCCACCAGCCCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189-0-6,0-5,0-4,0-3-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGATTCCGGCCTGG
R:
TAAGGGGCTGGTGGCTGG
Band lengths:
106-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains