HsaEX1037427 @ hg38
Exon Skipping
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35 member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr20:46358387-46364458:-
Coord C1 exon
chr20:46364015-46364458
Coord A exon
chr20:46363086-46363222
Coord C2 exon
chr20:46358387-46358763
Length
137 bp
Sequences
Splice sites
3' ss Seq
TAGGCACCCAATTTTTATAGATT
3' ss Score
3.01
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAGTTACCGCCCGTGCCGCGGTTCGGCGGCGGCATCCGGCCTCGCACTTCCGGTGGGGAGATTCCGGCCTGGAGCTCCCAGGGCCGAGGTGAGTGGGTGTGCGGCCGGCCTCCCGGCGCACTCCCAGAGGCTGGGGGGCCGGGGCTGGAGAAGGGAAGCGGGCTCCCCACCCGGGATCTGCGCGGGTTGACATGGGGCACGCCACGCCCCTGCCCCTCCCCGGGCCTCAGTTTCGCCGTCTGTGGAGGGGGCAGGGGTCTCCAAGCGCCCTCCTGCAAGGCACCTGCCGGACGCCGGCTCATCTGGTATTTCCTGAGCACCTGCGACGTCCTGGGTGCGGGACCCGGGCCGGAATCGGACACGGCCCTGCCCTCTGAGGGGCTGCTTCCCGCGGTGGGATTGGGGCGGGCAGTAAACACGTGAGCAAACAAGGAAACGTCAGAG
Seq A exon
ATTGAGTTGACAAGAAGGTGCCAGCAAAAAAGACCAATAAGGAGTCCAGAAAAGCAGAAGAAAAACCAGGAGAATGTGGTATCGTGGCACCCAAGAGAAGGTTTTTTCTAGGAGGAGGAAGTGATCCATTGTGTAAG
Seq C2 exon
CAGACCTTGGGACCTGTGAGCGCTGCATCCAATTAACCATGGGAAGGGTCAGCACCAGCCACCAGCCCCTTAGGTGAGGACTCTGCCTGGGGCTCTGCTGATGGTTCCGAATCATGGAGCTGCAGAGAGCTCCTCCAGCCTGGAGACGTTCTTGGTGAAAGCTGTGGTCTAACTCCACCGGCTCTTCCTGCACATTGTATTCAAGAGGGGTGCCTGCCCCCGCTGACTCAGGAGCTCCGGTGCTGCAGCCGCCACGAATGGGGAGGTGGGCCCTCGATGTGGCCTTTTTGTGGAAGGCGGTGTTGACCCTGGGGCTGGTGCTTCTCTACTACTGCTTCTCCATCGGCATCACCTTCTACAACAAGTGGCTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0089215=EamA=PU(10.7=24.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000317734fB26023
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGCTCATCTGGTATTTCC
R:
CCAGGCAGAGTCCTCACCTAA
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains