HsaALTA0007946-1/7 @ hg38
Alternative 3'ss
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35 member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr20:46355104-46355874:-
Coord C1 exon
chr20:46355802-46355874
Coord A exon
NA
Coord C2 exon
chr20:46355104-46355178
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TCTTCATGTTCACCTACAAGTCC
3' ss Score
2.26
Exon sequences
Seq C1 exon
GTACACAATGACCAAATCCTCAGCTGTCCTCTTCATCTTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq A exon
NA
Seq C2 exon
TCCACACAGTTCAACGTGGAGGGCTTCGCCTTGGTGCTGGGGGCCTCGTTCATCGGTGGCATTCGCTGGACCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189-16-24,16-22,16-21,16-20,16-19,16-18,16-17-1/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=FE(18.3=100)
A:
NA
C2:
PF0315111=TPT=PU(18.5=77.8)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAAATCCTCAGCTGTCC
R:
CAGCGAATGCCACCGATGAA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains