MmuALTA0016660-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165280879-165281380:-
Coord C1 exon
chr2:165281308-165281380
Coord A exon
NA
Coord C2 exon
chr2:165280879-165280891
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TCTTCATGTTTACCTATAAGTCC
3' ss Score
2.39
Exon sequences
Seq C1 exon
GTACACGATGACCAAATCCTCTGCTGTGCTCTTTATCCTGATTTTCTCTCTCATCTTCAAGCTGGAGGAACTG
Seq A exon
NA
Seq C2 exon
TCCACGCAGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664-23-22,23-21,23-20-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084496=UAA=FE(16.2=100)
A:
NA
C2:
PF0315111=TPT=PU(50.0=77.8)
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types