MmuEX0043136 @ mm10
Exon Skipping
Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165278241-165282933:-
Coord C1 exon
chr2:165282783-165282933
Coord A exon
chr2:165282081-165282144
Coord C2 exon
chr2:165278241-165278416
Length
64 bp
Sequences
Splice sites
3' ss Seq
GGGTGTCCCTGTCCCCACAGCAC
3' ss Score
9.52
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AGCTTCCACTTTCCGCTCTTCATGACCATGCTGCACCTGGCCGTCATCTTCCTCTTCTCCGCCCTGTCCAGGGCACTGGTTCAATGCTCCAGCCACAAGGCCCGGGTGGTGCTGAGCTGGACGGACTACCTCAGAAGAGTGGCCCCCACAG
Seq A exon
CACTGGCAACAGCACTTGACGTGGGCCTGTCCAACTGGAGCTTCCTCTACATCACTGTGTCCCT
Seq C2 exon
GTCTCCACTTGTCCACCTCTGAGAAGATCTTCCGCTTCCAGGACACAGGGCTGCTCCTGTGGGTGCTTGGGAGCCTCCTCCTCGGTGGGATTCTGGCCTTCGGTTTGGGCTTCTCCGAGTTCCTCCTGGTCTCCAGAACGTCAAGCCTCACACTCTCCATCGCTGGCATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664_MULTIEX1-1/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF084496=UAA=FE(33.8=100)
A:
PF084496=UAA=FE(14.2=100)
C2:
PF0315111=TPT=FE(38.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCAGAAGAGTGGCCCC
R:
GAACTCGGAGAAGCCCAAACC
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types