RnoEX0082341 @ rn6
Exon Skipping
Gene
ENSRNOG00000018649 | Slc35c2
Description
solute carrier family 35 member C2 [Source:RGD Symbol;Acc:1311250]
Coordinates
chr3:161806138-161807572:-
Coord C1 exon
chr3:161807422-161807572
Coord A exon
chr3:161806876-161806939
Coord C2 exon
chr3:161806138-161806210
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGAACTCCCTGTCCCCACAGCAC
3' ss Score
10.08
5' ss Seq
TCTGTGAGG
5' ss Score
2.91
Exon sequences
Seq C1 exon
AGCTTCCACTTTCCCCTCTTCATGACCATGCTGCACCTGGCCGTGATCTTCCTCTTCTCCGCCCTGTCCAGGGCACTGGTCCAGTGCTCCAGTCACAGGGCCCGGGTGGTGCTCAGCTGGACTGACTACCTCAGAAGAGTGGCCCCCACAG
Seq A exon
CACTGGCAACAGCACTTGACGTGGGCCTGTCCAACTGGAGCTTCCTCTACATCACTGTGTCTCT
Seq C2 exon
GTACACAATGACCAAATCCTCTGCTGTGCTCTTTATCCTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018649_MULTIEX1-2/6=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTCCTCTTCTCCGCCCT
R:
GCACAGCAGAGGATTTGGTCA
Band lengths:
136-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]