HsaALTA0007989-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:219629580-219630352:+
Coord C1 exon
chr2:219629580-219629695
Coord A exon
NA
Coord C2 exon
chr2:219630153-219630352
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTGCTGTGTTGCCTCCCCAGCTC
3' ss Score
8.75
Exon sequences
Seq C1 exon
TTCTCCATTGGAAGTGACGAGGATGACAGTCCAGGCCTCCCTGGGAGGGCTGCTGTCACCAAGCCCCTGCCCTCGGTGGGCCCACACACTGACAAGAGCCCCCAGCACTCCAGCAG
Seq A exon
NA
Seq C2 exon
CTCCCCCAGCCCCCGGGCCCGGGCCTCCCGACTCGCTGGGGAGAAAAGCCGGCCCTGGAGCCCATCGGCCAGTTATGACCTGCGGGAGCGACTGTGCCCAGGCAGTGCCCTGGGCAACCCAGGTGGTCCAGAGCAGCAGGTGCCCACAGATGAGGCGGAGGCCCAGATGCTGGGTTCTGCAGACCTGGACGACATGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-10-12,10-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAGGATGACAGTCCAGG
R:
GGTCATAACTGGCCGATGGG
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development