HsaALTA0008256-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8853103-8860897:-
Coord C1 exon
chr11:8860857-8860897
Coord A exon
NA
Coord C2 exon
chr11:8853103-8853235
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCTTTTTTTTATGGAGACAGGGT
3' ss Score
0.97
Exon sequences
Seq C1 exon
ATTTCACACCCTTTGGAGAGTTTCTTTCTTGGATAATTCAG
Seq A exon
NA
Seq C2 exon
GGTCTTGCTGTGTTGCTCGGGCTGCTCTTGAACTCCTGGGCTCAAACAGTCCTCTTGCCTCAGCCTCCCAACGTGCTGGGATTACGGGAGCAAGCCACCCCACTGTGTGCAGCCCAGAAGTTGAGCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACCCTTTGGAGAGTTTCT
R:
AGGCAAGAGGACTGTTTGAGC
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)