HsaEX0062012 @ hg19
Exon Skipping
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8832794-8892635:-
Coord C1 exon
chr11:8892501-8892635
Coord A exon
chr11:8860857-8860897
Coord C2 exon
chr11:8832794-8832882
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCACTCTTTTCACAGATT
3' ss Score
10.82
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCCGGCCGCAGCCCGGGGCGCGGATGCCTGCCCGCCGCCCGCCCTCTCTGCAGGAGCGGCTCCTCCTCCGGGCCGCGCGGCTCCCGGCGAGACCCCATCCAGGCGCCGCGCCCGGCCCGGCTGGGGAACGCAGAG
Seq A exon
ATTTCACACCCTTTGGAGAGTTTCTTTCTTGGATAATTCAG
Seq C2 exon
GAAGATGAGAGACTGCTTAGGCGCCACCACTAGTACCATGAGTCCCTGCACTGGTTAAAGCCATCGCCACAACCTGGACAGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444_MULTIEX2-3/9=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGCAGGAGCGGCTC
R:
AGTGCAGGGACTCATGGTACT
Band lengths:
144-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)