HsaEX0062012 @ hg38
Exon Skipping
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8811247-8881109:-
Coord C1 exon
chr11:8881010-8881109
Coord A exon
chr11:8839310-8839350
Coord C2 exon
chr11:8811247-8811335
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCACTCTTTTCACAGATT
3' ss Score
10.82
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCTTTCACAGAAAACCACTGGAGGAGATACTCACAAAAATGAAGGGGAAGAACAGGAAACAGGAAGACATGAGATGAAGGAAACAGGAGATTCAACATGG
Seq A exon
ATTTCACACCCTTTGGAGAGTTTCTTTCTTGGATAATTCAG
Seq C2 exon
GAAGATGAGAGACTGCTTAGGCGCCACCACTAGTACCATGAGTCCCTGCACTGGTTAAAGCCATCGCCACAACCTGGACAGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-'4-36,'4-19,15-36
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAAGAACAGGAAACAGGA
R:
CAGGTTGTGGCGATGGCTTTA
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development