HsaEX1039115 @ hg38
Exon Skipping
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8811247-8831688:-
Coord C1 exon
chr11:8831556-8831688
Coord A exon
chr11:8830762-8830874
Coord C2 exon
chr11:8811247-8811335
Length
113 bp
Sequences
Splice sites
3' ss Seq
TATCTTCCCACTACTGTCAGGCA
3' ss Score
5.45
5' ss Seq
TAGGTGGAT
5' ss Score
-0.4
Exon sequences
Seq C1 exon
GGTCTTGCTGTGTTGCTCGGGCTGCTCTTGAACTCCTGGGCTCAAACAGTCCTCTTGCCTCAGCCTCCCAACGTGCTGGGATTACGGGAGCAAGCCACCCCACTGTGTGCAGCCCAGAAGTTGAGCCTGAGAG
Seq A exon
GCACTGTGAGCAGCTGTTGCTATCACACGGGCGGATCAGAACATGAAGAATGGAGCTAAATAGAGCTGTCTGCATGCTGTTCTGATGGGCTCAGGCTCAGCCTCAGAGAATAG
Seq C2 exon
GAAGATGAGAGACTGCTTAGGCGCCACCACTAGTACCATGAGTCCCTGCACTGGTTAAAGCCATCGCCACAACCTGGACAGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444_MULTIEX2-8/16=7-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTGCTGTGTTGCTCGG
R:
CCAGGTTGTGGCGATGGC
Band lengths:
210-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains