HsaEX0062011 @ hg19
Exon Skipping
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8860857-8902656:-
Coord C1 exon
chr11:8902557-8902656
Coord A exon
chr11:8892501-8892635
Coord C2 exon
chr11:8860857-8860897
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTCTCTCCCTGCAGCCC
3' ss Score
14.6
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CCTTTCACAGAAAACCACTGGAGGAGATACTCACAAAAATGAAGGGGAAGAACAGGAAACAGGAAGACATGAGATGAAGGAAACAGGAGATTCAACATGG
Seq A exon
CCCGGCCGCAGCCCGGGGCGCGGATGCCTGCCCGCCGCCCGCCCTCTCTGCAGGAGCGGCTCCTCCTCCGGGCCGCGCGGCTCCCGGCGAGACCCCATCCAGGCGCCGCGCCCGGCCCGGCTGGGGAACGCAGAG
Seq C2 exon
ATTTCACACCCTTTGGAGAGTTTCTTTCTTGGATAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444_MULTIEX2-2/9=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACAGAAAACCACTGGAGGA
R:
TGAATTATCCAAGAAAGAAACTCTCC
Band lengths:
138-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)