HsaEX0062014 @ hg19
Exon Skipping
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8772168-8853235:-
Coord C1 exon
chr11:8853103-8853235
Coord A exon
chr11:8832794-8832882
Coord C2 exon
chr11:8772168-8772272
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGCTCTCCATTTCAGGAA
3' ss Score
12.53
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGTCTTGCTGTGTTGCTCGGGCTGCTCTTGAACTCCTGGGCTCAAACAGTCCTCTTGCCTCAGCCTCCCAACGTGCTGGGATTACGGGAGCAAGCCACCCCACTGTGTGCAGCCCAGAAGTTGAGCCTGAGAG
Seq A exon
GAAGATGAGAGACTGCTTAGGCGCCACCACTAGTACCATGAGTCCCTGCACTGGTTAAAGCCATCGCCACAACCTGGACAGGCAGCAAG
Seq C2 exon
GGCTCTGGGTTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444_MULTIEX2-5/9=4-6
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCTGGGCTCAAACAGTC
R:
CGTGGGTGATGCTGGAATTCT
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)