BtaEX0034699 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44290329-44396633:+
Coord C1 exon
chr15:44290329-44290862
Coord A exon
chr15:44334630-44334718
Coord C2 exon
chr15:44396529-44396633
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCCTCTCCATCGCAGGGA
3' ss Score
10.58
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGTGATTGAAACCATCTGGACTGCAGGGGCGTCACGTGTGTGTGAGAAAATGACATAAAGTTTCAGACCCTCTTGTGTTTTGCTCCAGACCCAGACAATTCTTGGTCGGATGGTCCGAGGTGAGGGCCGGTCCAGTTTGAGGACCAACTCCTCATCCTGTTCTCCACCCCCATCTTCCCATCCCCAGCGCCCTCCCTCCCCCGCTTTGCGCGCACTCAGCGCGGTTTTCTTGTTCCCTCCAGAGCCTCCGAGCATACCCCTCCGCCGGGCTCCAGCAGCCCACCCTCCCAGTCTCGGGTGGAGGCACACCTCTTCCACGCCCCTCTCCACTCAAATCTGTGCTCCCTCCCTTCTCTCTCGCTTCAGCCCGGCCGCAGCCCCGGGCGCGGATGCCCGCCCGACGACCGCCCTCTCTCCCGGAGCGGCTCCTCCTCCGGGCTGCGCGGCTGCAGGCAAGCCCCCATCCTTGCGAGCACCCAGCCCGGCTGGGGGGCTCAGAG
Seq A exon
GGAGATGAGAGGCTGCTTTGGCACCGGCGCTAGCAGCATGTGTCCCTGCACTGGTTGAAGTCGTCGCCCCAACCTGGGCAGGCAGCAAG
Seq C2 exon
GGCTCTGTGTTTGCAGAGAGCAGAAATGACCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGAGGCACTAAGGCCCCTCGAGGGACTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACCGCCCTCTCTCC
R:
CCGTGGGTGATGCTGGAATTC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development