RnoEX0086448 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174187624-174289647:-
Coord C1 exon
chr1:174289600-174289647
Coord A exon
chr1:174234319-174234408
Coord C2 exon
chr1:174187624-174187728
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTCTCCTTTGCAGGCA
3' ss Score
12.58
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CGTGGAGCTCAGACTGTGCGGAGCTCCCGGCAGGCTCGGGCGGAGGAG
Seq A exon
GCAGACAGGAGACTGCTTAGGCTCTGGCACTAGTACCATGGGACCCTGTACTGGTTAAAAGCCGGCTCCAGGACCTGAACAGACAACAAG
Seq C2 exon
GGCTCTGGGCTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAACTCCAGTATCACTCATGGAGCCGGAGGCACTAAGGCCCCTCGGGAGACGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934_MULTIEX2-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCTCAGACTGTGCG
R:
CTGCTCAGCGTCTCCCGAG
Band lengths:
152-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]