RnoEX0086447 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174234319-174289647:-
Coord C1 exon
chr1:174289600-174289647
Coord A exon
chr1:174250645-174250748
Coord C2 exon
chr1:174234319-174234408
Length
104 bp
Sequences
Splice sites
3' ss Seq
AACTACATGTATCTTTGCAGCTG
3' ss Score
7.85
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
CGTGGAGCTCAGACTGTGCGGAGCTCCCGGCAGGCTCGGGCGGAGGAG
Seq A exon
CTGGACAACAAGAAAGTTGTGTCTTAAAACTACAGGAAAGCTTTCTTGAAAGAGGCCAAATGATCAAGAAGAGCACCCAAGAAGCTTCTTCCTCTCTCTATAAG
Seq C2 exon
GCAGACAGGAGACTGCTTAGGCTCTGGCACTAGTACCATGGGACCCTGTACTGGTTAAAAGCCGGCTCCAGGACCTGAACAGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGCTCAGACTGTGC
R:
CTTGTTGTCTGTTCAGGTCCTGG
Band lengths:
138-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]