RnoALTD0029404-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174187624-174234408:-
Coord C1 exon
chr1:174234319-174234408
Coord A exon
NA
Coord C2 exon
chr1:174187624-174187728
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TACAGGTGTCTTCTTTTCAGGGC
3' ss Score
8.6
Exon sequences
Seq C1 exon
GCAGACAGGAGACTGCTTAGGCTCTGGCACTAGTACCATGGGACCCTGTACTGGTTAAAAGCCGGCTCCAGGACCTGAACAGACAACAAG
Seq A exon
NA
Seq C2 exon
GGCTCTGGGCTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAACTCCAGTATCACTCATGGAGCCGGAGGCACTAAGGCCCCTCGGGAGACGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934-13-7,14-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACTGCTTAGGCTCTGG
R:
GTCTCCCGAGGGGCCTTAG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]