HsaALTA0009293-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000169344 | UMOD
Description
uromodulin [Source:HGNC Symbol;Acc:HGNC:12559]
Coordinates
chr16:20350650-20352710:-
Coord C1 exon
chr16:20352689-20352710
Coord A exon
NA
Coord C2 exon
chr16:20350650-20350776
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCGTCTTTCCTTTGGGCAGGTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
AACTCTACCTTTCTGGCTTCAG
Seq A exon
NA
Seq C2 exon
GTGCTATCTAGACCTGAAGTAGCGGGAAGAGCAGAAAGGATGGGGCAGCCATCTCTGACTTGGATGCTGATGGTGGTGGTGGCCTCTTGGTTCATCACAACTGCAGCCACTGACACCTCAGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169344-1-10,1-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTACCTTTCTGGCTTCAG
R:
CAGTGGCTGCAGTTGTGATGA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development