HsaALTA0009293-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000169344 | UMOD
Description
uromodulin [Source:HGNC Symbol;Acc:12559]
Coordinates
chr16:20361972-20364032:-
Coord C1 exon
chr16:20364011-20364032
Coord A exon
NA
Coord C2 exon
chr16:20361972-20362098
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCGTCTTTCCTTTGGGCAGGTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
AACTCTACCTTTCTGGCTTCAG
Seq A exon
NA
Seq C2 exon
GTGCTATCTAGACCTGAAGTAGCGGGAAGAGCAGAAAGGATGGGGCAGCCATCTCTGACTTGGATGCTGATGGTGGTGGTGGCCTCTTGGTTCATCACAACTGCAGCCACTGACACCTCAGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169344-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(18.4=30.0),PF129472=EGF_3=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTACCTTTCTGGCTTCAG
R:
CAGTGGCTGCAGTTGTGATGA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)