HsaALTA0009293-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000169344 | UMOD
Description
uromodulin [Source:HGNC Symbol;Acc:12559]
Coordinates
chr16:20361972-20364032:-
Coord C1 exon
chr16:20364011-20364032
Coord A exon
chr16:20362099-20362161
Coord C2 exon
chr16:20361972-20362098
Length
63 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCATCCATCTCTGTTCACAGGAC
3' ss Score
10.18
Exon sequences
Seq C1 exon
AACTCTACCTTTCTGGCTTCAG
Seq A exon
GACACCAGACATCAGAGACAGAGAGAAAAATTCAAAGGGCCAACCCGTCTTTCCTTTGGGCAG
Seq C2 exon
GTGCTATCTAGACCTGAAGTAGCGGGAAGAGCAGAAAGGATGGGGCAGCCATCTCTGACTTGGATGCTGATGGTGGTGGTGGCCTCTTGGTTCATCACAACTGCAGCCACTGACACCTCAGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169344-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(18.4=30.0),PF129472=EGF_3=PU(0.1=0.0)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTACCTTTCTGGCTTCAG
R:
CAGTGGCTGCAGTTGTGATGA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)