HsaALTA0009332-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000136878 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr9:129880113-129880567:+
Coord C1 exon
chr9:129880113-129880289
Coord A exon
chr9:129880379-129880466
Coord C2 exon
chr9:129880467-129880567
Length
88 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GTCCTTTTGAACATCCAAAGAGC
3' ss Score
2.58
Exon sequences
Seq C1 exon
GAGCTGACTACGGGCAGATTTCGGAGGAGACCTGGACCTACCTGAACAGCCTGTATGGAGGTGGCCCCGAGATTGCCATCCGCCAGAGTGTGGCGCAGCCGCTGGGCCCAGAGAACCTGCACGGGGAGCAGAAGATCGAAGCCGAGACGCGGGCCGTGTGATCTGCTGGGCTAGTCT
Seq A exon
AGCAGGTCCCTGAAAGCACCTTCCTGGAGGATGTGGGAGGGCCCTGGACATGGCCCGGCCCCACTGCTGAGTGCCCGTGTCCCCACAG
Seq C2 exon
CCCCATGTGCCCCACCCCGCGGAAGGCGTGTTTGTGCCCAGAAGAGAGGCCGGGCTGCTGCAGAACCCCGCCGTGTAAAGAGGCAGAAAAGTTGGTTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136878-57-61,57-60,57-59-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(37.7=53.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCCTGTATGGAGGTGG
R:
TCTCTTCTGGGCACAAACACG
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains