HsaALTA0009686-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000198939 | ZFP2
Description
zinc finger protein 2 homolog (mouse) [Source:HGNC Symbol;Acc:26138]
Coordinates
chr5:178339585-178340072:+
Coord C1 exon
chr5:178339585-178339720
Coord A exon
chr5:178339980-178339982
Coord C2 exon
chr5:178339983-178340072
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTAATGTCTCTCCTCTTAAGCAG
3' ss Score
5.46
Exon sequences
Seq C1 exon
TTTCAGGAGTCAGTGACCTTCAAGGATGTGTCCATAGATTTCTCTTGGGAAGAGTGGATTCAAGCAGATTCTGCTCAGAGGATGACCGTGTATGGGGAGGTGATGCTGGAGAACTACAGGAACCCGGTCTCACTGG
Seq A exon
CAG
Seq C2 exon
GAAATCACCTTTCCAAACCCAATGGGACTTCCCAGCTGGAACGAGAACTGAGTCTGATGCAAAAAGAACCGCCTGAGGGTGGCTTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198939-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGGAACCCGGTCTCACT
R:
ACCCTCAGGCGGTTCTTTTTG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)