RnoALTA0045556-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030750 | Zfp2
Description
zinc finger protein 2 [Source:RGD Symbol;Acc:1562610]
Coordinates
chr10:36400034-36400471:-
Coord C1 exon
chr10:36400303-36400471
Coord A exon
chr10:36400124-36400126
Coord C2 exon
chr10:36400034-36400123
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TTGGTCTCTTTCTTCCCAAGCAG
3' ss Score
5.29
Exon sequences
Seq C1 exon
GAATCACTGATATACAAAGATGTGTCTGTGGACTTCACTTGGGAGGAGTGATGCAGCTATGTTCTGCACAGAGGAACCTGTATGGCAGGGTGATGCGGGAGAACTGGAGCACCCTGGTCTCCCTGGGTGAGCAACCCCACCTTCAGCCTTCTGCCTATGGAATTCACAG
Seq A exon
CAG
Seq C2 exon
GGCATCAACCATCCAAACCAAATGTGATCTCTGACCTGGAACAAGAACTGACTCTGAGAAAAGGAGAATTCCCAGGTTGCATCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030750-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACTGGAGCACCCTGGT
R:
TTGGTTTGGATGGTTGATGCC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]