HsaALTA0009716-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71251178-71251601:-
Coord C1 exon
chrX:71251558-71251601
Coord A exon
chrX:71251242-71251244
Coord C2 exon
chrX:71251178-71251241
Length
3 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCCATCTTTCCGAGGTACAGAAG
3' ss Score
-3.42
Exon sequences
Seq C1 exon
GAGATGGCCTGACTGCGAAGGCGAGTGAGAAGCCGCCTGAACGG
Seq A exon
AAG
Seq C2 exon
AGAAGCGAGCGCGTTAGGAGAGCAGAACCTCCAAAACCTGAGGTTGTAGATTCCACTGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-8-11,8-10,8-9-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGCCTGACTGCGAAG
R:
TACAACCTCAGGTTTTGGAGGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains