HsaALTA0009718-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35405373-35408052:+
Coord C1 exon
chr1:35405373-35405468
Coord A exon
chr1:35408008-35408021
Coord C2 exon
chr1:35408022-35408052
Length
14 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TGTTTTCTACCTTTCCACAGTCC
3' ss Score
10.59
Exon sequences
Seq C1 exon
GGGTTGAACAGGCCTCATCTAGCCCACGTTCTGACCCCTTAGGAAGTACTCAAGACCATGCACTCTCTCAAGAATCCTCAGAGCCAGGCTGTAGAG
Seq A exon
TCCGCTCTATCAAG
Seq C2 exon
CTGAAGGAAGACATTCTGTCCTGCACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-79-71,79-70,79-69-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTTCTGACCCCTTAGGA
R:
GTGCAGGACAGAATGTCTTCCT
Band lengths:
99-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains