HsaALTA0009733-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:12915]
Coordinates
chr5:43120985-43122249:+
Coord C1 exon
chr5:43120985-43121225
Coord A exon
chr5:43122141-43122145
Coord C2 exon
chr5:43122146-43122249
Length
5 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ATCATGCTCTTCTTTTGTAGAGC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GAACGTGCTCGCGCCCGTAGCTGCCGCTGCCGGGGCCGCGGCCGCCCGGGTGCCCAACCGAACGCACGTGCGCCAGCGGGGCCCGAGCAGAAGGGGAGCCCCGGCTCTCACGAAGAAAATGGAGGGCGACCCACGGGTTAGGGGTCAGGAAAGGCGTGGGGCGCATTATGCCCTGGGAGGGGAAAGCACGGAACAAGAGGCTCTGAGGGACGGAGAGGAAGGAGGGCGACCCACGAGCTAG
Seq A exon
AGCAG
Seq C2 exon
CCCGACGGCCATGGAGGCTGAAGAGACGATGGAATGCCTTCAGGAGTTCCCTGAACATCATAAAATGATCCTCGACCGATTGAATGAACAGCGAGAGCAGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-10-22,10-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.085
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=PU(30.5=42.9)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCACGGAACAAGAGGCTC
R:
TCCATCGTCTCTTCAGCCTCC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)