HsaALTA0009733-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chr5:43120883-43122147:+
Coord C1 exon
chr5:43120883-43121123
Coord A exon
chr5:43122039-43122043
Coord C2 exon
chr5:43122044-43122147
Length
5 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ATCATGCTCTTCTTTTGTAGAGC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GAACGTGCTCGCGCCCGTAGCTGCCGCTGCCGGGGCCGCGGCCGCCCGGGTGCCCAACCGAACGCACGTGCGCCAGCGGGGCCCGAGCAGAAGGGGAGCCCCGGCTCTCACGAAGAAAATGGAGGGCGACCCACGGGTTAGGGGTCAGGAAAGGCGTGGGGCGCATTATGCCCTGGGAGGGGAAAGCACGGAACAAGAGGCTCTGAGGGACGGAGAGGAAGGAGGGCGACCCACGAGCTAG
Seq A exon
AGCAG
Seq C2 exon
CCCGACGGCCATGGAGGCTGAAGAGACGATGGAATGCCTTCAGGAGTTCCCTGAACATCATAAAATGATCCTCGACCGATTGAATGAACAGCGAGAGCAGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-28-31,28-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.100
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=PU(30.5=42.9)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCACGGAACAAGAGGCTC
R:
TCCATCGTCTCTTCAGCCTCC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development