HsaALTA0009737-3/3 @ hg38

Alternative 3'ss

Gene

ENSG00000176293 | ZNF135

Description

zinc finger protein 135 [Source:HGNC Symbol;Acc:HGNC:12919]

Coordinates

chr19:58063446-58067567:+

Coord C1 exon

chr19:58063446-58063541

Coord A exon

chr19:58066705-58066740

Coord C2 exon

chr19:58066741-58067567

Length

36 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

3' ss Seq

ACTCTTTTGCCGTGGAACAGAGA

3' ss Score

3.92

Exon sequences

Seq C1 exon

GACATTGGTTACCGAAGCCGAATGTCATCTCCCTGCTGGAGCAAGAGGCAGAGCTGTGGGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAG

Seq A exon

AGATTAAGGGACATTTCCAGTTTTTGCTTCTTTCAG

Seq C2 exon

ACTTGGAAACTAGACCCAAAGTCAAACTGTCAGTTCTAAAGCAAGGCATCTCTGAAGAAATATCCAACAGTGTCATCTTGGTAGAAAGATTCCTGTGGGATGGTCTGTGGTACTGCAGGGGTGAGGACACTGAGGGCCACTGGGAATGGAGTTGTGAGAGTCTAGAGAGCCTGGCAGTGCCGGTGGCCTTCACGCCTGTGAAGACGCCTGTTCTGGAGCAGTGGCAGAGGAATGGGTTTGGGGAAAACATAAGTCTGAACCCTGATCTCCCACATCAACCAATGACTCCTGAAAGACAAAGCCCCCACACATGGGGAACACGTGGAAAAAGGGAGAAGCCAGACCTAAATGTTTTACAGAAAACCTGTGTAAAAGAGAAACCCTACAAATGTCAGGAATGCGGAAAGGCCTTTAGTCACAGCTCAGCACTTATCGAACACCACCGGACGCACACAGGAGAGAGACCTTACGAATGTCACGAATGCTTAAAAGGCTTCCGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000176293-8-11,8-10,8-9-3/3

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.193

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)

Main Inclusion Isoform:

ENSP00000441410