Special

HsaINT1047296 @ hg38

Intron Retention

Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:HGNC:12919]
Coordinates
chr19:58063446-58068630:+
Coord C1 exon
chr19:58063446-58063541
Coord A exon
chr19:58063542-58066704
Coord C2 exon
chr19:58066705-58068630
Length
3163 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACTCTTTTGCCGTGGAACAGAGA
3' ss Score
3.92
Exon sequences
Seq C1 exon
GACATTGGTTACCGAAGCCGAATGTCATCTCCCTGCTGGAGCAAGAGGCAGAGCTGTGGGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAG
Seq A exon
GTGAGATGGGAGCCCTTCGGGGCAGAGAGAAGCCTGTCCATGCTTGCTTCCTGGTTTCTCCCTCTGCATCTGCTCTCTAATTCTTCAGAGCAAATTTACTACTCAGTCTTAGTGAAGATTTACCAAGCACCCATTTTGCTGTGAGTGACGACACCACGTCCTCATCTCCACTGAATTTATATTCTTGGTGAGGGAGTGGGGGAAACAAACAATAAATCGGTAAAATAATAATAATAAAACAAGTTGGATGATTACAGATTGTGATGAATGCCGAGAAAATGAAAATGAGCAATGAGGTAGACTAGGAGGGGGATGAGTAGACTTTAGCAGAGAGATGAGGGATAGCCTCTCCAAGGAGGTGACATGTGACTTGAAGCCTGAGCCATGAGGCAGTCTGAGTGAACAGTAGTATTTCAGGCAGAGGAAACAGCAGGTGCAAAGGCCTGAAGTCATGCATCAGTCAGCTTTTGTGTAGGAAAACACTCTGACCTCAGTGGCTTAAACCAAATAATTGTTTATAATTCATGTGTCTGTGGGTCAGTGGATCCAGGCTGGGCCCTACGCCATGTGCCTGTAGGGTGATTGGTAGGTAGCAGAGGTATCCCAGCCCACTGACAGGCAATTTCCCATTGGCATCAGGTGGGAAGAGTGGCCTGTCACCAGAGTCCAGGAGGGATGGCCAGTGTGGGAAAGGGTCACAGTAGGGTCCCTCCACATCAATAACAGCCCTTACCCAATATATTAGCTTCCTATTGCTCCTCCTGCAACCAGTTACAAATGACCCGTGAATAACATGGGTTTGAACTGTGTGGGTCCATTTATACATGGATTTTCTTCTGCCTGAGCCACCCCTGAGACAGCAAGACCAACCCCTCCTCCTACTCCTCAGCCTACTCACTGTGAAGACAATGAGGATGAAGATCTTTATGGTGGTCCACTTCCATTTAATGCATAGTAAATATATTTTCTCTTCCTTATGATTTTTTTAAATAGCTTTTTCTTTAGCTTACTTTAAGAACACATTATATAATACATATACAAAATATGTGTTAATTAAGGGCTGGGAGCAGTGGCTCACACCTATAATCCCAGCACTTTGAGAGGCTATGGCAGGTGGTATTTGAGGTCGGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACAAAAAAAAAATACAAAAAAAAAAAATTAGCTGGCCATGGTGGCACGCTCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAACTGCTTGAACTAGGAGGTGGAGGTTGTGATGAGCCAAGATCACGCCACTGTGCTCCTGCCTGGGTGACAGAGCAAGACCATGTTTCAAAAAAAACAAAGTGTTAACTATTTATTTTATCAGTATGGTCAACAATAAGCTATTAATAGTTAAGTTTTTGGGGAGTCAAAGGCTATACACAGATTTTCGATTGTACTGGGGTCAGTGCCCCTAGCCCCCTCATTGTTCAAGCGTCAACAATACTACACTTCGTAGCATAAAGCAAAGCAAATTATTTTAAAGTTCGGGAGATCAGAAATCCACAATGGGTCTAGCTGGAATATAATAAAGATGTCAGCAGGGCATCATTCCTTCTGGAGGCTCTAGGGAAGGGAAGAATCTATTTCTTTCTCTCCTTTTTGTTTTTTTAAGAGATGGGGTCTTGCTATCTTGCCTAGGATGGAGTCCAGTGGTATGATCATGGCTCACAGCAACCTTGACCTTCTGGGCTCAGGTGATCCTCCTGCCTCAGCCTCCTGAGTAGCTGAGACTACAGGTGTGTGTCACCATGCCCAGCTAATTTTTTTTTATTTTTTGTAGAAACAAGGTCTCATCATTTTGCCCAGGCATGTCTTGAACTCTTAGGCTCAAGGAGTCCTCCCACCTCAGCTGCCCAAAGTGTTGAGATTACAGGCATGAGGCCCTGTGCCTGGCTAAGAATCCGTTTCTTTGCATTTTTCAGCTTCTAGAGGCACCCACATTCCTTGGCTATGGCCTTGTCCATCTTCACAGTCAGCAAGGCCTGGTCAAGTCACATCATATTCACTCTGACTCTGACCCTTCTGCCTTTTTTCCCCATTTAAGGACCCTCGTGATTACACAGGTCCACCCAGATAATCCAGTGTAATTTCTCTATCTTAATGTTAGCTGATTAGCAACCTTAATTCCTCCCTCCCATGTAATTGGAAACATACAGGTTATAGGGTTAGGATGTGGGCATCTTGGGAAGCCACTATTCTGCCATTCACTCTGGCTTAACTTTTTTTTTTTTAATTGAACTTTTCACTGAAACATAACAATATGGGGAAGGTGCCCACATCACACCTCTAGGCCACTGTGGGGTCAGGGTAGGGGCAGCACACACCCAGGTCATGGCTGTGCAGAGAGGGCTGGGTACCAGGGCAAAAAGAGAGTCCTGCCATGAAGGAGGAGGAGGGAATGCATTTGTTCATTCATTAAGCATGTATATTGAGCTCTTGCTGTGGGCTATAGATACAGTGGTAAGCAAGGTGGACGGAAACCCCTACCCTCAAGGGGTTCCCAGTTAGTGAAATGGACAAAATAAGGCAGACCAAAGCACTCTAATATGCCACGGGTCATTTTTCTTCCTCTTAGTGATGTACATTGCAGCTATTCCTGTTTGTGGGGAGCAGTTAGGTTCCTTTACATCTAGAGTGAGGTGGCACAACAGCATATGCTGTCGGGAAGAAGCTGGGTATCAGCCAACTTTCCCCATGCAGCACGTTTTTCTCTGTTGCCACCTGGCATTGTGGAGGCCACTGTAGCTGGAGCCTGGGTGCCACACTGCTCCTTCCAAGTCCAGTGCCTCTGTGTGTCTGAGTGCTCTCTCCTGGGCATCCGCTCTGCATCCTCCTCTGTGCTCCCCTCACAGACTCCATTCATACTCCTTGTGCCAACTGTTTTTTCCTCCCTCTCCTCTTCCTTTCCTTATTCTGTTCTTTCCTCTTCCTTTCCTTATTCCTTATTTTCCTCTTCCTTATTCTGTGTTTCCCTCTCTTCCTTTCCTGGTTTGCAAAACTATATTTTTAAATGGTCAAAGCCACTTGAACCTTGAACGTTTCAAAATAATTAGTTTTATCCTTCCTCTTCCCATCTCACCACAAACTCTTTTGCCGTGGAACAG
Seq C2 exon
AGATTAAGGGACATTTCCAGTTTTTGCTTCTTTCAGACTTGGAAACTAGACCCAAAGTCAAACTGTCAGTTCTAAAGCAAGGCATCTCTGAAGAAATATCCAACAGTGTCATCTTGGTAGAAAGATTCCTGTGGGATGGTCTGTGGTACTGCAGGGGTGAGGACACTGAGGGCCACTGGGAATGGAGTTGTGAGAGTCTAGAGAGCCTGGCAGTGCCGGTGGCCTTCACGCCTGTGAAGACGCCTGTTCTGGAGCAGTGGCAGAGGAATGGGTTTGGGGAAAACATAAGTCTGAACCCTGATCTCCCACATCAACCAATGACTCCTGAAAGACAAAGCCCCCACACATGGGGAACACGTGGAAAAAGGGAGAAGCCAGACCTAAATGTTTTACAGAAAACCTGTGTAAAAGAGAAACCCTACAAATGTCAGGAATGCGGAAAGGCCTTTAGTCACAGCTCAGCACTTATCGAACACCACCGGACGCACACAGGAGAGAGACCTTACGAATGTCACGAATGCTTAAAAGGCTTCCGGAACAGCTCGGCACTTACCAAACACCAGAGAATCCATACTGGGGAGAAACCCTATAAATGCACTCAGTGTGGGAGGACCTTCAACCAAATTGCCCCACTGATCCAGCACCAGAGAACTCACACAGGTGAGAAGCCCTATGAATGCAGCGAATGTGGGAAATCCTTCAGTTTTAGGTCCTCCTTCAGCCAGCACGAGCGAACTCACACAGGCGAGAAGCCCTACGAGTGCAGTGAGTGTGGGAAAGCCTTCCGGCAAAGCATCCACCTCACCCAGCATCTGCGAATCCACACTGGGGAGAAACCCTATCAGTGTGGTGAGTGTGGCAAGGCCTTCAGCCACAGCTCATCCTTGACCAAACACCAGCGAATCCACACAGGGGAGAAGCCCTACGAGTGCCATGAGTGTGGAAAAGCCTTCACCCAGATCACACCACTGATTCAGCACCAGAGGACCCACACAGGAGAAAAGCCCTATGAGTGTGGTGAGTGTGGGAAAGCCTTCAGTCAGAGCACACTCCTGACCGAGCATCGGAGGATTCACACAGGAGAGAAGCCCTATGGATGCAACGAGTGTGGGAAAACCTTCAGCCACAGCTCCTCACTCAGCCAGCATGAGCGGACACACACAGGAGAGAAGCCCTATGAGTGCAGTCAGTGTGGGAAGGCCTTCCGGCAGAGCACACACCTCACCCAACACCAGCGAATCCACACAGGGGAGAAGCCCTATGAATGCAATGACTGCGGCAAGGCATTCAGTCACAGCTCGTCCCTCACCAAACATCAGCGAATCCACACTGGGGAGAAGCCCTACGAATGCAACCAGTGTGGCAGAGCCTTCAGCCAGCTTGCTCCCCTCATTCAGCATCAGAGGATCCACACAGGAGAGAAACCCTATGAATGTAACCAGTGTGGCAGAGCCTTCAGCCAGAGCTCCCTTCTCATCGAACACCAGAGGATTCACACCAAGGAAAAGCCGTATGGGTGCAATGAGTGTGGGAAATCCTTCAGCCACAGCTCCTCGCTCAGCCAGCACGAAAGGACGCACACTGGGGAAAAGCCCTATGAGTGTCACGATTGCGGAAAGTCCTTTAGGCAGAGCACCCACCTCACTCAGCACCGGAGGATCCACACAGGAGAGAAGCCATATGCATGCAGGGACTGTGGAAAGGCCTTTACCCACAGCTCCTCCCTTACCAAGCACCAGAGAACTCACACTGGATAAACCCACTCCACATGTGCTGGGGACATAGGAAGACCTTAAGCCATAGCTCATCCCTTTCTAGATTTGACCCAATCATACACATGAGAAACGTACATTCATACACAAGCCTTTTCACACAGCACTCCCCTCAGACACCCTCAGAGAGTTCACACTGATGGGAAATGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293:ENST00000511556:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.190
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSP00000441410





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSP00000321406, ENSP00000369437, ENSP00000422074, ENSP00000427691
  



Associated events







Conservation


Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
chrLGE64:602727-602972 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Autistic and control brains





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"