HsaALTA0009745-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000196345 | ZNF167
Description
zinc finger protein 167 [Source:HGNC Symbol;Acc:12955]
Coordinates
chr3:44609799-44611620:+
Coord C1 exon
chr3:44609799-44609925
Coord A exon
NA
Coord C2 exon
chr3:44611417-44611620
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
CTTCTTTCTTTGGGCAGCAGGTG
3' ss Score
3.95
Exon sequences
Seq C1 exon
GATACTGTGGCATATGAGGACCTATCTGTAGACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCAGAGAGCCCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGGCCTCCTTGG
Seq A exon
NA
Seq C2 exon
GTGAGAACATGATGAAGGGTTCAGAGTTGACTCCAAAGCAGGAATTTTTTAAAGGATCAGAGTCATCTAACAGGACATCAGGGGGACTCTTTGGGGTGGTTCCTGGGGCAGCAGAGACTGGAGATGTTTGTGAAGATACTTTCAAGGAGTTAGAAGGACAAACCTCAGATGAAGAAGGGAGCAGACTAGAAAATGATTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-5-7,5-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=10.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTGGAACATGATGCCA
R:
TCCTGCTTTGGAGTCAACTCTG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)