HsaALTA0009756-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000132010 | ZNF20
Description
zinc finger protein 20 [Source:HGNC Symbol;Acc:HGNC:12992]
Coordinates
chr19:12135769-12136874:-
Coord C1 exon
chr19:12136851-12136874
Coord A exon
NA
Coord C2 exon
chr19:12135769-12135895
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ATATATGTGAGATGTTTCAGGAT
3' ss Score
1.09
Exon sequences
Seq C1 exon
AACCATCTGTCCCTGTTCCTTCTG
Seq A exon
NA
Seq C2 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTCAGCTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGATGTGATGCAGGAAACCTTCAAGAACCTGACCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132010-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(95.7=75.9)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTGTCCCTGTTCCTTCT
R:
GGAAGGATCCAGCAAAGCCC
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development