HsaINT0186408 @ hg38
Intron Retention
Gene
ENSG00000132010 | ZNF20
Description
zinc finger protein 20 [Source:HGNC Symbol;Acc:HGNC:12992]
Coordinates
chr19:12135769-12140407:-
Coord C1 exon
chr19:12140180-12140407
Coord A exon
chr19:12135905-12140179
Coord C2 exon
chr19:12135769-12135904
Length
4275 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCCTCTTTTATATATGTGAGATG
3' ss Score
2.19
Exon sequences
Seq C1 exon
AGAAGCGCCGGGGCGGAGCCCGGCCAACGGTCCGTCCGGAAGGAGGAGGCCCATTCCAGCTTCTACTTTTGTTGCTATGCAGGTTGTTGTCGGGATACCAGATTTCCTACTCCGAGAGGCCCCGGGTCCCTCTGCCACAACTTCTGTCGCTCTGCCGCCTGCACCGTGACCCGCACTATTCACGGGAGCCCTAGAGAGGACACCGGGACACCCAGAAGCCGGGAAATG
Seq A exon
GTGAGTGTATGGGGCCGGAGTCCCCAGACGGGGGAGGGGCTGGGTGGAACCGGCCGGAAGCGGCTGTGGTGGGATCTGGGCCTCCTCGCCGCGCCTCCTGGATCTGGGACCCGAATCCCTCTGTCTCAGCTCGTCCCTGCGTCCCCTCGGCCGCAGGGTGCGGCTGGGCCGGCAGCCGGGACCCCGGGCGTCCTCCTGTTCTGTTCCTGCGCGGGCGACTGTGGGCCCCGACCCTGGAGCCCTCTCTGGGCAGCTCCGCGCCTGCAGCCCCGCGTCTCTTCAGATTTTGCGGGGACCACGGGAGGGTCATGGGGGAATCCTGCGGATTTTTTTTTCTGTTAAAGAGTTTGGGCCGGGCGCGGTGGACCATGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCTTGCGGATCACGAAGTCAGGAGATCGAGACCATCCAGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCATGCGCCTGTAGTCCCCGCTACTCAGGAGGCTGAAGCAGGAGAATCGCATGACCCCAGGAGACGAAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAACCTAGGGGACAGAGCGAGATTCCATCTCAAAAAAAAAAAAAAATTTAAAGAGTTTGAGCAAACAGCGATTCATGAGTGAGAAACGCCCAGTCATGATTTGTGGTTTTGGTACCAGAAAGTTTTAAGAAGAATTGCATTTTGTTAACGGTGGAGGGGGTCCAGGTTCTTGGCGTCTTGAACAAAGAATTGGACAAAACGCACAAAGCAAGGAAGGAATGAAGGGATTTAACACTCCACAGTGTGCAAGCGGGGCTGAGCACAGGGGCTCAAAGGCCCCGTTACAGAATTTTTGGGAGTTTAAATACCCCCTGGAGGATTCCATTGGTTACTTGGGGTATACTCTATGTAAAAGGAGAGGATGAAGTAAGGTTATAAAATCATTTACTTGGCTTACGCCCTATGGAGTAGGTATTTCCTTTCATAGCTGAAGTTTGAATAGGCCTTATGTTCCCTGCGTCCAGACCCTATTTTCCTGCCTCAATTTGAGTTTGATTTTGGTGTCCTTAGGTAGTTTCTTATAGCACTAAACACACTTCAGTCTAATTGCTGCTGCTTTAAATTTTTTCACACTGTCTATAGGGACTGGCTTCCTCCTGCATTTTCCTAATGTATGGGTCTCAAATCCTCCACCCTGCTACCCCGCCCTAACTCTTCAGCAGTTTGCAGTAACATCTTAAATTTTCAATTACTTTTCCGCATCTCCAAACATTAACTCCCCTTCTCCAACTCACAGTATTATCAACTTTCTTTTTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAGGCTGGAATGCAATGGCATGATCTTGGCTCATTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGTATCAACTTTCTTTATTGTAGAGTATATTTCTTCATCCTTTCTTTCACATAGATGCAGTATTTTAGTGGTTTATCATCTTTTCACAAGGTCATGGATAACTTTTTTTAAAATATTTGTGTTCTGTTTCTGAACATTTCACATAGAATAGAGAATAACCACTTGATACTCCAGTGAAAAACCTCTGTTCCTCTCCTCTTATCTTCGTAAGGCACAGACACCATCTCAGAATGTCTTTGGGTTGTTTCCTTTTTTTTTTTTTTTTTTGAGAGAAAGTCTCTCTTTGTAACCCAGGCTGAATTGAAGTGGCGTGGTCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAGGTGATTCTCCTGCCCTCAGTCTCCCGAGTAGCTGGGTTTACAGGTATGCGCCACCATACCCCATGTATTTTAAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGAGCTCAAATGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGAATTTTACAGGCGTGAGCCACCGTGCCTGGCCTGTTTCCTTTTTGAAAACTTTACAGGGTGATGTGTCTTCAGGAGTCCCAATCTATCTTTTCCTGGTCCTGGGTTTCAGAACCGCCTGGGGCTGAACCAAAATGCCCACAGCTCCCATCTCTCCTGGCCTACTGAATATCAGCCCCTGTGTCAGTCCTCCCAGAGGATAGCCTGAGGCAGGGTGTGGGATCTCCCAAAGGAGCAACTGAATTTCCCAAATGGGAGGAGACTCCTGGTACACTCTTCATCTAGATAGCCAACCCCTTGGGATGCTCAGTTTTTCTCCCCCAGTCCCAGCTTCCATTATTTGGAGACACATAGCTGGTCAGCCAGTTGGATGTTGCTATTAAGGGAAAGGTGTAGGTGAAGTGAGCCACAGCAGAGTCATCTCAACAAAGCCATAAAGCCATGACATAACAGTGCATTATCACATCCCAGACAGATGAGGGCAGCACACCTTGCAGGGCAACACAGAGTGGGGGGAACATCCAGGATGCACATTCAACCAGCAGGTGGGGAGAAAGACAGACAGGGACTTTTGGGCCAGAGTTTTTCTTGGGGTCCAGGGCAATGCCCAAGGAGGTTTCTCTTAGGGAGTTGTTTCTGATAGATTTGGAGCAAGCAGGTGCTAGTTCTGTGAAGTCAGGCTGTGATTAACAGGTGGTCTGTGCCATCCACGTGGGTATAAGGGTCAGTGGGGCAAGTCAAGTTGGTCTGTCTAGCTTTTCCACAGTGAGGTCGTCACCAGGAGGCAGCTGTGTAAGTCACATATGTGGGTTGAGCACATGCAGGAACTGGGAGGAGGTGGATAACTGGAAACTGTTGAGGTCAAGTGCAGCTTTCTTCTTCTTCTTTTTTTTTTTTTTTTCTGAGACAGTCTCTTTCTGTCGCCCAGGCTGGAGTGAAGTGGCGCTCTCTCAGCTCACTGCAACCGCCGCTTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCACACACCCGGCTAATTTTTGTGTTTTTTAGTAGAGAGGGAGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCCTCACCTGAAGTGATTGGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTACACACGGCTTGAGTACGGGTTTCTTCTGTTATAAGAAAGTGAAACCCATAATGAAAATGCATGGTAAGGTAACATAAGAAGTCACGGTAACAGGCAACTCTAGAATTAATTCATATGGAGATGATGGGCTTCAAAGATTGTTTGTTCTCCTGTAGGTAACCATCTGTCCCTGTTCCTTCTGGTAAGTGAGGACCACTTGCATAATTGGCTGGTGATACCTGCTTTGTCGTGGTTTCACTATTTTCAGAATCTGCTGTTTTCCATTAGTCTATCTTTCCATCTGTTAATACCATTTTCTCTTGATTAGTATAGATTTTATTTATTTTATTTTATTTTATTTTTTCGAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCAATCTCAGCTCACCGCAATCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCAACATGCCCAGCTAATTGTGTATTTTTTTTTTTAATAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTTTCGAACTCCCGACCTCAGGTGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCGCCTGGCCTATTTATTTTATTATTATTTTTTTGAGATGGAGTATTGCTTTGTCGCCCAGGCCGGAGTGCAGTGACGCGATCTCGGCCCACTGTAACCTCTACCTCCTGGGTTCAAGTAATTCTCCTACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCACCACCACGCCTGGCTGATTTTTATATTTTTAGTAGGGACGGGTTTCTCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGACTGGCCAAAGACCCTCTCTCTTAACAAAAAAAGGGTTGGTTTGTGGGAGGACGTGAGTATAGACAGAAAGTAAGAGGTGTGATGACCAAGTCATGGGATAAATGTTTGGAGTCCACAGTATCATGAGAACTTCTTAGGAATAAAGTATAGGCCTCCAGGGCTGTTAGTCTTACCTGTCCTCTTTTATATATGTGAG
Seq C2 exon
ATGTTTCAGGATTCAGTGGCCTTTGAGGATGTGGCTGTCAGCTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGATGTGATGCAGGAAACCTTCAAGAACCTGACCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132010:ENST00000334213:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PU(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=WD(100=89.1)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains