HsaALTA0009758-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:12996]
Coordinates
chr16:3162561-3163488:+
Coord C1 exon
chr16:3162561-3162683
Coord A exon
chr16:3163350-3163417
Coord C2 exon
chr16:3163418-3163488
Length
68 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GTTTCTGTCTGCTCTTCTAGGCT
3' ss Score
10.44
Exon sequences
Seq C1 exon
TCCTGTCTTCCCTACTCCCAGTCTCCACCCAACTCCCCCGCCCGCCCCGTGCAGGCTGTGGAGACTCCCTTCCCGGGGGAGGGGGCCCCCACTGCCGCAGGTGCCCCCTCTGCCTCCACCCCG
Seq A exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAAAAAGAGGGAGAAACAACTCAGCTGTTCTTTCTAG
Seq C2 exon
CTCTGAAATAGAAAATGTCTGCAGACGGCGGAGGCATCCAGGACACCCAGGACAAGGAGACACCCCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCCAGTCTCCACCCAAC
R:
TGTCTCCTTGTCCTGGGTGTC
Band lengths:
173-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)