MmuALTA0020497-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23722405-23723166:-
Coord C1 exon
chr17:23722928-23723166
Coord A exon
chr17:23722508-23722541
Coord C2 exon
chr17:23722405-23722507
Length
34 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
ATTACTTTCCTCTTTTCCAGGTT
3' ss Score
12
Exon sequences
Seq C1 exon
GGTTTCACTCTAGGGAGGGGGTCTCCATTCCCACCTTCACCCCCGGGTCTCCTTTGTTTCCTCCTTGTGTGAAGGGGATGCTAGGGAAGGCACATGGAAATCGGCTCGTGCAGTCAGCTTGCAGAAGGGGGCAGGGTCAAAGGTGGAATGCTGGCAAGCGATAATGAAGGGGCTGGACCCAGGATTGGGAAGATGAGGACACGTACCACCCAGACCACGACCACGATGATCGTTCCCAG
Seq A exon
GTTCTTGGCTAAAACCTGGACGGGGCTCGACTAG
Seq C2 exon
CAAGGGAAAGAACCATTTGCTGTTTTTCCTGGCTCTGAAGTGGAAGATGTCTGCAGACAGTCAAAGCATCGCGGCTACTGAGAACGAGGAGAAATCCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCACGACCACGATGATC
R:
TCTCCTCGTTCTCAGTAGCCG
Band lengths:
121-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: