HsaALTA0009758-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
Coordinates
chr16:3112560-3113487:+
Coord C1 exon
chr16:3112560-3112682
Coord A exon
chr16:3113349-3113440
Coord C2 exon
chr16:3113441-3113487
Length
92 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GTTTCTGTCTGCTCTTCTAGGCT
3' ss Score
10.44
Exon sequences
Seq C1 exon
TCCTGTCTTCCCTACTCCCAGTCTCCACCCAACTCCCCCGCCCGCCCCGTGCAGGCTGTGGAGACTCCCTTCCCGGGGGAGGGGGCCCCCACTGCCGCAGGTGCCCCCTCTGCCTCCACCCCG
Seq A exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAAAAAGAGGGAGAAACAACTCAGCTGTTCTTTCTAGCTCTGAAATAGAAAATGTCTGCAG
Seq C2 exon
ACGGCGGAGGCATCCAGGACACCCAGGACAAGGAGACACCCCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386-0-3,0-2,0-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCTTCCCTACTCCCAGT
R:
CTCCGGGGGTGTCTCCTTG
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains