HsaEX1044883 @ hg38
Exon Skipping
Gene
ENSG00000263072 | ZNF213-AS1
Description
ZNF213 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:50505]
Coordinates
chr16:3110460-3114887:-
Coord C1 exon
chr16:3114795-3114887
Coord A exon
chr16:3112283-3112399
Coord C2 exon
chr16:3110460-3110954
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATGAGGATGGCTTTACCCAGGAC
3' ss Score
1.13
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
AATAGGAGAGGACACAGAGACACAGAGAAGGAAGCAGAGACTGGAGGGATGCCCACACCAAGGACACCAGGAGCCCCCAAGGAGTTGGAAGAG
Seq A exon
GACGCGTTCATGATGCCAGCAAGGCAGAGCCACCAAAACAGAAAAATGGAAGATGCATTTTGTGGAAAGATTGTGTTATTTGAAATTTCAAAGCGAGCACTGCAGTTGTCCTCACAG
Seq C2 exon
ACGGAGTTTCGCTCTTCTTCCCATGCTGGAGTGCAATGGCGCAATCTCAGCTCACCCCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGATTACCTGGGATTACAGGCATGTGCCACCACACCTGGCTAATTTTGTGTTTTTAGTAGAGATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCCTAAAATGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCTATAAAATTGATTCTTTAAAAAAAATTAGAACATTTACCGATGCTGGACCCACCTTCCCCACCTTCAGGGTCCACTTTCTAGGTGGCCACAGTGCCTGCTTGGCCCCTGTAGCATTTGAGTTTGCAACTCTGCTTTTGGAGTTAAACATGTTTTAGGAGTCCTGGGATTCTGATTGATGCTATTGTCAATTTGATGAAAGAAAAATTACTCCTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000263072-'29-34,'29-33,30-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCAGAGACTGGAGGGAT
R:
CCGACATGGAGAAACCCCATC
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains