HsaEX1044866 @ hg38
Exon Skipping
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
Coordinates
chr16:3113349-3115568:+
Coord C1 exon
chr16:3113349-3113487
Coord A exon
chr16:3114300-3114628
Coord C2 exon
chr16:3115355-3115568
Length
329 bp
Sequences
Splice sites
3' ss Seq
GCCACCCTGTGTTTATCCAGGAC
3' ss Score
8.62
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAAAAAGAGGGAGAAACAACTCAGCTGTTCTTTCTAGCTCTGAAATAGAAAATGTCTGCAGACGGCGGAGGCATCCAGGACACCCAGGACAAGGAGACACCCCCGGAG
Seq A exon
GACTTTCCTGAGCTGGCAGCTCCTTCTCCATCATTATCTGCGTGAACCTCATGACCATTCTGTGCAGGGGCAGAGCAGCTGCGTCCTGAAGGCTGCCTGATTGGGGAGGGGTGTCGCTGGGTCTGGCACCCAGGCACTCTGATTCCTGGCCTGAGGTTCTTTCCCTTCAAGACCCAAACACAGACAGGGCGTGGAGGAAGGAGTGTGAGACCCCAGCAGAAGTCCGGCCAGTTCCTGTGCTGTGGATGAGGCCCCACCAGGGCCCTCCCTGACTTTCCCAAAGCTTTTGAGCTATGTGGTCACGGGGCATTGTCTCATCCCCAGCCATG
Seq C2 exon
GTTCCAGATCGTGGACATCCTCATCAGGAAATGCCTTCTAAGCTGGGGGAGGCGGTACCTTCAGGGGACACTCAGGAGTCACTGCACATTAAGATGGAGCCCGAAGAGCCACACTCCGAGGGGGCATCGCAGGAGGATGGGGCTCAAGGTGCCTGGGGCTGGGCACCCCTAAGTCACGGCTCTAAGGAGAAAGCTCTCTTCCTGCCTGGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000382192fB30633
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGGCCAGAAGCTG
R:
CCAGGCAGGAAGAGAGCTTTC
Band lengths:
348-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains