HsaALTA1061928-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000263072 | ZNF213-AS1
Description
ZNF213 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:50505]
Coordinates
chr16:3114795-3116519:-
Coord C1 exon
chr16:3114968-3116519
Coord A exon
NA
Coord C2 exon
chr16:3114795-3114882
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTATGTCCTTATAAGAATAGGAG
3' ss Score
0
Exon sequences
Seq C1 exon
TGTGGCTCTTCGGGCTCCATCTTAATGTGCAGTGACTCCTGAGTGTCCCCTGAAGGTACCGCCTCCCCCAGCTTAGAAGGCATTTCCTGATGAGGATGTCCACGATCTGGAACCTAGAAAGGACAGCCCCATCAGCACCCAGATGAGTGGGAGAGACACCCAGGGCCACATGGCAGTGCGCTCCGGCAGCGTCGGAAACCAACATGCAAGACGCAGCTTGAAGGACTGTCCTTGCTGCATTCATCCAGCTCACCCCAGCAAGGACGGGCGGCAAGAGGAGGAATATTCACCAAGCCGCCTCCACAGTGCCGGTGGGCGTGGTGCCCAAGGGCAGCTACCCCTTCTCAGCTCCAGCCTCACACTGACCTCAGCAGTGTAGACTGCTGTCTATTAGTGTATGAAGAAACCAAGTGTAGTGGCTTGAATAGTGTCCTCTAAGAATCCGTGTCCTCCCTGGACCTCAGAATGGGACCTTATTGGGGAAAAGGGTCTTTATACAG
Seq A exon
NA
Seq C2 exon
GAGAGGACACAGAGACACAGAGAAGGAAGCAGAGACTGGAGGGATGCCCACACCAAGGACACCAGGAGCCCCCAAGGAGTTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000263072-28-24,28-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCTCAGAATGGGACCT
R:
ATCCCTCCAGTCTCTGCTTCC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains