HsaINT1047328 @ hg38
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
Coordinates
chr16:3113349-3115568:+
Coord C1 exon
chr16:3113349-3113487
Coord A exon
chr16:3113488-3115354
Coord C2 exon
chr16:3115355-3115568
Length
1867 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GATGGGGCTGTCCTTTCTAGGTT
3' ss Score
9.11
Exon sequences
Seq C1 exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAAAAAGAGGGAGAAACAACTCAGCTGTTCTTTCTAGCTCTGAAATAGAAAATGTCTGCAGACGGCGGAGGCATCCAGGACACCCAGGACAAGGAGACACCCCCGGAG
Seq A exon
GTACAGATGGGGCTGGCTGAGGGAGGTGTGCGGTAGAAGAGGCTGGTGCGGAGGAGATTTTCAAGGCACAGAGTCTGGACCCCTGGAAGAGTTAGACTCACTGGGGTGGGGAGATCAAAGAGAAGGTGGCATGCTGGGTAGTACCCTCTGTCTGGAATTTACAGCATAACAGTTTTGCTTTGCTGGTGAATTCTCTAGCCAGTGGCCACAGGAGATGGAAGAGGTCTGGGTGGAGGTCCTATCAGTGAGGTTTTCTTTCTGAGCAGCGCTCAGAGCACACAGGGAAACCTGTTCTCCTTCCCCGTGCTTCTCCACCTGGAACCACAGCTTCTCATCTCTGTGGGTCTGAGCTCCCGGTCCTTTCTCCTTCCTGTACCTGCTACCCGTGTGTGTGTGCGTGCGTGGTTGAGTGTGTGTGTGTAATTACTATTTGTGGGGGACCTGGGTCTCCGGGCTTGGAGTTGGAGGAGTATGAGTCAGCGACAGGCCAGGGGCCAGTCCCTGGCCTCTGGGAACCAGATGTGTCATCTGTAAAATGCAGACCACATGCCTGCCATTTCCACCTGTCTCGCAGGGTCACTGGGAGGCTCTAAGGATAATAGGCATGAGACGCCATCATCTATGGTTTTCATGCCATAGAAGCACAAAGAATTGTTAGCATGGTTCAGTTTCCCATCCACTTCCCGTGTGCCTTGAACACCTTGGGCATGTCAGTAGAGCCCCACATGTTGGCATTCTCTGCTGGCACTGGCTTCTGTCTGGTGCGCACGGCGGGGGGGATTAATGACCAGCGCCACCCTGTGTTTATCCAGGACTTTCCTGAGCTGGCAGCTCCTTCTCCATCATTATCTGCGTGAACCTCATGACCATTCTGTGCAGGGGCAGAGCAGCTGCGTCCTGAAGGCTGCCTGATTGGGGAGGGGTGTCGCTGGGTCTGGCACCCAGGCACTCTGATTCCTGGCCTGAGGTTCTTTCCCTTCAAGACCCAAACACAGACAGGGCGTGGAGGAAGGAGTGTGAGACCCCAGCAGAAGTCCGGCCAGTTCCTGTGCTGTGGATGAGGCCCCACCAGGGCCCTCCCTGACTTTCCCAAAGCTTTTGAGCTATGTGGTCACGGGGCATTGTCTCATCCCCAGCCATGGTGTGTTAGTCTCCCGTGGCTGCTGTAACAAGTTTCCACTCTCTGGGGGGCTGAAAACAACCAGAATTGGCTCTCTCACAGTCCTGGAGGCCTGCAGTCCAAAATCTAGGTGTCAGCAGGGTCACACTCCTTTTGAAAGCTCTAGACTAAGAGGACCCTCCCTTACCTCTTCCAACTCCTTGGGGGCTCCTGGTGTCCTTGGTGTGGGCATCCCTCCAGTCTCTGCTTCCTTCTCTGTGTCTCTGTGTCCTCTCCTATTCTTATAAGGACATAAGTCATTGTTAGATTTTAGGCTCACTCTAAATTCACGATGATTTAATCTCAAGATCTTTAACTTACCTGTATAAAGACCCTTTTCCCCAATAAGGTCCCATTCTGAGGTCCAGGGAGGACACGGATTCTTAGAGGACACTATTCAAGCCACTACACTTGGTTTCTTCATACACTAATAGACAGCAGTCTACACTGCTGAGGTCAGTGTGAGGCTGGAGCTGAGAAGGGGTAGCTGCCCTTGGGCACCACGCCCACCGGCACTGTGGAGGCGGCTTGGTGAATATTCCTCCTCTTGCCGCCCGTCCTTGCTGGGGTGAGCTGGATGAATGCAGCAAGGACAGTCCTTCAAGCTGCGTCTTGCATGTTGGTTTCCGACGCTGCCGGAGCGCACTGCCATGTGGCCCTGGGTGTCTCTCCCACTCATCTGGGTGCTGATGGGGCTGTCCTTTCTAG
Seq C2 exon
GTTCCAGATCGTGGACATCCTCATCAGGAAATGCCTTCTAAGCTGGGGGAGGCGGTACCTTCAGGGGACACTCAGGAGTCACTGCACATTAAGATGGAGCCCGAAGAGCCACACTCCGAGGGGGCATCGCAGGAGGATGGGGCTCAAGGTGCCTGGGGCTGGGCACCCCTAAGTCACGGCTCTAAGGAGAAAGCTCTCTTCCTGCCTGGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386:ENST00000382192:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGGCCAGAAGCTG
R:
CCAGGCAGGAAGAGAGCTTTC
Band lengths:
348-2215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains