HsaINT1047327 @ hg38
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
Coordinates
chr16:3112560-3113487:+
Coord C1 exon
chr16:3112560-3112682
Coord A exon
chr16:3112683-3113348
Coord C2 exon
chr16:3113349-3113487
Length
666 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GTTTCTGTCTGCTCTTCTAGGCT
3' ss Score
10.44
Exon sequences
Seq C1 exon
TCCTGTCTTCCCTACTCCCAGTCTCCACCCAACTCCCCCGCCCGCCCCGTGCAGGCTGTGGAGACTCCCTTCCCGGGGGAGGGGGCCCCCACTGCCGCAGGTGCCCCCTCTGCCTCCACCCCG
Seq A exon
GTGAGAAGGGGGTGCTGGGGAGGGCATCTGGATCCCGAGACCGGCGCAGATGATCAGCTTGCAGGAGGGGATGGGGTCAAAGGTGGAAGGCTTCAAGCTGGCAGGAGAGAAGGGGGCCAGGACCGGGTTTGGGAAGGAGAAGGACATTGTCTGCCAGGACCGAGAGCAGGATGGGCATCCCAGGCCTGGGGCAGGTGGTTGCAGCTGCAGGGGGGCTGCTGAGAGCGGGCAGGTTGATTTCTGAATTCCTGGTGGGCATGGGAGTCAGGTAGGGACACACGGTGTATGTCCTGGGGTCGGGGGACAGCAGGTCCTGGATTACCCTGGCCTTGACGGGCGGGGCCCCACCAGCACCTGTTCTGCAGGATCTCTGCAGAACTTTCTGCTCCTGATGACAGGAAATAGCGATTCCAATTTAGCCTCGGCTTTCCCTGAGCCGGTTACACTGAGATGCGAGGCTCTTGCTTCAGCAATAAAGGGGACAATACAAAATAGCATTCTTTCAAAAATAGGACCCAGAAAACATCACAGAGAGTGGGACCATCGGATAGGATCTGGGAGACTTTCTTTCCGATTGGGACCAGGGAGCGCTGGTACTCGTGGGGATTTTCAGGGCTCTTTGGGGGTGTCCAGGAAGCGAGGGCTGGTTTCTGTCTGCTCTTCTAG
Seq C2 exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAAAAAGAGGGAGAAACAACTCAGCTGTTCTTTCTAGCTCTGAAATAGAAAATGTCTGCAGACGGCGGAGGCATCCAGGACACCCAGGACAAGGAGACACCCCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386:ENST00000382192:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTCTTCCCTACTCCCAG
R:
CTCCGGGGGTGTCTCCTTG
Band lengths:
262-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains