HsaALTA0009760-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000170260 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:HGNC:13004]
Coordinates
chr7:149239651-149250400:+
Coord C1 exon
chr7:149239651-149239802
Coord A exon
NA
Coord C2 exon
chr7:149250164-149250400
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAG
5' ss Score
6.23
3' ss Seq
TCTTTAATCCATCAGCACAGGAG
3' ss Score
0.75
Exon sequences
Seq C1 exon
AGAATGCACCTGGCATCAACACGGCGGCGGCGGCGGCGGCTTCCAACAGGCTCTGGGGCGCCGAGCGGACAGGAACGCAGCACGGGGGCTCCGAGGCGGGGTCTGGGTGTTGAGGGGCGACTGGAGCCATGGCGGAGTCGGCGCCTGCTCGG
Seq A exon
NA
Seq C2 exon
GAGAAAACGACGCTCCACACCTTTAACTTCTTCCACACTTCCTTCACAAGCAACAGAGAAAAGCTCCTATTTTCAGACCACCGAGATTTCACTCTGGACGGTGGTGGCCGCTATTCAGGCTGTGGAGAAGAAGATGGAGTCCCAGGCTGCCCGGCTACAGAGCCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCTGACTGCGAGAAGATGGCCGTGGAGTTCGGGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170260-0-9,0-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.274
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAGGGGCGACTGGAG
R:
TGCTTGTGAAGGAAGTGTGGA
Band lengths:
97-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development