MmuALTA1036994-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000052763 | Zfp212
Description
Zinc finger protein 212 [Source:MGI Symbol;Acc:MGI:2682609]
Coordinates
chr6:47920476-47926896:+
Coord C1 exon
chr6:47920476-47920749
Coord A exon
NA
Coord C2 exon
chr6:47926512-47926896
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TCCTCAATCCTACAGCACAGGAG
3' ss Score
-0.49
Exon sequences
Seq C1 exon
CACACTCAATGACTGAATTTCCAGGCTGCTGTTCCCCTTCCAGGAGCACAGTGGCGCAACAGAAATACCGCGCGGTAGGAGGAGCCGCTGCCGCTCTTCTTGGGGGTGGGGAGCGCTCCCAGAATGCACCTTGTATCAACACGGCGGCGGCGGCGGCGGCGGCGGCTTCCAGGAGGGTGAGGACGTCTGGCGGAGCGGCGTACAGTTCGAGCAGTATCCCGCCAGTCGGTGTTGTGGGGCGACTGCGACCATGGCGGAGTCGACGCCTACTCGG
Seq A exon
NA
Seq C2 exon
GAGGAAACGGCGCGCCACGCCATTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCCGTACTTTCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCCGTGGAGAAGAAGATGGAATCACAGGCTGCCCGACTGCAGAGCCTGGAGGGGCGTGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAGCGGCGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGTCTGCCTCCCGGCAGCAAGGGGGAGACCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052763-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCGACGCCTACTCGG
R:
CTGTGGTCTGAAAGTACGGGC
Band lengths:
102-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types