HsaALTA0009779-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56999280-56999504:-
Coord C1 exon
chr15:56999461-56999504
Coord A exon
chr15:56999342-56999348
Coord C2 exon
chr15:56999280-56999341
Length
7 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGACTGATATCATGTGTCAGTAC
3' ss Score
2.48
Exon sequences
Seq C1 exon
GAAGGAAAACAGAAATAACTTGCTGGCTTGTCTGGAGTCACATG
Seq A exon
TACTTAG
Seq C2 exon
GTGACAATTTACAGAAAGTCATCTCTGCAGCTTGATGGGCGACAACCCTTTTCAACCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATAACTTGCTGGCTTGTCTGG
R:
TTGGTTGAAAAGGGTTGTCGC
Band lengths:
92-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)